Research Published on Alzheimer’s Molecules

Biology professors Jim Langeland ’86 and Blaine Moore join one K student and three K alumni as authors of an important paper that will soon be published in the journal Molecular Biology and Evolution. The co-authors are Nathalie Botezatu ’14, Maddie Gillentine ’13, Ashley (Boehmke) Benson ’08, and Kyle Wilson ’08. All were (or are) biology majors at K, and in the case of some, the scientific work—which describes the evolution of key molecules involved in Alzheimer’s disease—was part of a Senior Individualized Project (SIP). The work is groundbreaking in at least two ways. First, it approaches Alzheimer’s disease from an evolutionary perspective. And second, it illustrates a particular niche approach to research that the scientific environment at K is well positioned to pull off.

“The experiments that culminated in this paper began in 2007 with the SIP work of Benson and Wilson,” says Langeland. “The six-year duration shows that science can take a long time to come to fruition.” That duration derives, in part, from the complementary expertise of the two collaborating labs—Langeland’s expertise in gene evolution and Moore’s background in Alzheimer’s disease research and experience with cellular expression of proteins.  According to Langeland, for most of the larger labs the exigency of understanding Alzheimer’s in order to development treatments for it may not favor such an extended timeline or evolutionary approach. Indeed, Moore says, “Most researchers in the Alzheimer’s field are exclusively focused on inhibiting the production of protein fragments that have been linked to the progression of the disease. One of the exciting aspects of this project was the chance to take a broader view of the proteins involved in the disease process.”

A broader view allows for unique approaches (suggesting that time and creativity are the two pillars of the particular niche approach to research for which K is so well-equipped). Six years ago Langeland decided to investigate the evolution of two molecules associated with Alzheimer’s—APP and BACE. BACE acts like a scissors to cut (or cleave) APP. The excess accumulation of one of the “cut pieces” (a.k.a. products or substrates, this particular one known as A-Beta) is linked to the development of the disease. Benson and Wilson sought answers to how far back on the evolutionary tree of life these molecules could be found. Turns out that APP is nearly a billion years old. BACE (and its cleavage effect) is much younger, about 500 million years old. Just down the hall, Moore’s lab had been studying the regulation of enzymes that produce A-Beta, and had well-developed systems for expressing Alzheimer’s proteins and analyzing cleavage products. Put the two together and you have a unique project that would have been unlikely at a larger institution or medical school.

The principle of natural selection suggests that BACE’s action on APP is vital to life in ways we don’t yet understand, according to Langeland. The A-Beta substrate may be some kind of mistake that natural selection is unable to “correct” because Alzheimer’s expresses so late in human lifetimes, usually long after reproductive success has been achieved. Moore says, “It’s essentially a wrong place, wrong time phenomenon. The APP substrate evolves the A-Beta motif, then comes in cellular contact with preexisting BACE. The result is a devastating disease process that is most likely an accidental by-product of some normal, as yet unknown, cellular process.”

Moore and his lab (including Gillentine and Botezatu) conducted an elegant experiment to confirm the importance of the BACE molecule. They expressed the BACE molecule from an organism—in this case a primitive marine dweller called amphioxus—that diverged from the human evolutionary branch some 750 million years ago. Amphioxus has no A-Beta. Then, Moore’s group discovered that amphioxus BACE nevertheless acts as a scissors to the human APP molecule. The result adds evidence to the biological importance (albeit unknown) of BACE’s cleaving action.

According to Langeland, an evolutionary approach to diseases may suggest molecular targets for treatment intervention, and, just as important, the limitation of a non-nuanced approach to potential targets.

The paper is titled “Asynchronous Evolutionary Origins of A-Beta and BACE-1.” The work was supported, in part, by a Great Lakes Colleges Association (GLCA) New Directions Initiative Grant, a program that supports professional growth of mid-career liberal arts faculty, with particular emphasis on projects outside traditional boundaries.

Winter Term Ethnic Studies

Dr. Reid Gómez, the Melon Visiting Assistant Professor of Ethnic Studies, has designed a series of winter term programs and web pages and prompts as a collective resource for a campus-wide conversations on the matter of ethnic studies. For many of these conversations the general public is welcome as well. The series begins with a lecture (Thursday, January 9) titled “What is Ethnic Studies?”  Gómez will give the lecture twice–at 4:10 PM and at 7 PM–in the Mandelle Hall Olmsted Room.

“Conversations about ethnic studies at K have been taking place since 1968,” says Gómez. “Recently a renewed movement and rising range of voices reflect the desire for a further exchange of ideas.”

Features on the ethnic studies website will serve to deepen that exchange. The features include a bookshelf, several faculty discussions, a blog for the K community, a calendar of events (programs occur every week of the 10-week term), and a series of conversations. For the latter, the campus community will be called to join several invited participants to discuss a particular theme, reading, or video prompt. Gómez will moderate. “We will sit in concentric circles (one inside, and the other outside),” says Gómez.  “The participants will take their place in the center, and we will leave several chairs open, should someone catch the spirit and chose to formally join the conversation. People may enter and exit the conversation at will, and they may choose to participate in silence, while listening. Everyone in the outside circle will have the opportunity to listen in.  Near the end, we will turn the circles inside out for the opportunity to debrief, and review the places our conversation lead us.  Opportunities for follow-up conversations will take place on the ethnic studies blog.”

Winter Term Will Open January 8

Kalamazoo College will open for winter term classes on Wednesday, January 8. The Wednesday schedule of classes will be in effect.

Some students and faculty members may not be able to reach campus by Wednesday. Everyone should provide the greatest degree of flexibility, understanding that some may be delayed in their return.  Students: if you are not able to be in class, please communicate via email with your professors to let them know.  Faculty: if you are unable to make it to campus, please notify your students.

The campus is in good shape for pedestrian traffic, thanks to the excellent work by the Facilities Management team. Please check weather reports throughout the week (especially for Wednesday) and dress appropriately.

Winter Quarter Opening UPDATE

Pedestrian traffic conditions on campus are good and we anticipate opening winter quarter on Tuesday, January 7. That said, we will continue to monitor the weather, surrounding transportation conditions, and campus parking in order to make a final decision tonight or early tomorrow morning regarding the opening of winter quarter.

We will inform students, faculty, and staff of that decision tonight or early tomorrow morning.

Even if we do commence winter term classes tomorrow (Tuesday, January 7) we will ask that all faculty and students provide the greatest flexibility, understanding that some may be delayed in their return.  Students: if you are not able to be in class, please communicate via e-mail with your professors to let them know.  Faculty: if you are unable to make it to campus, please notify your students.  Staff: if you are unable to make it to campus, please notify your supervisor.

We know that there has been a great deal of disruption in travel, especially airline and bus cancellations.  We ask that everyone use appropriate discretion regarding their travel plans and make your return to campus when you feel it is safest to do so.

College Will Be Closed on January 6

Due to the weather emergency, Kalamazoo College will be closed on Monday, January 6. Only essential employees should report to campus.

Dining Services will be open for students.

Winter quarter will open on Tuesday, January 7, WITH TUESDAY’S CLASS SCHEDULE. Students are encouraged to check their e-mail accounts often because faculty may choose to contact students via e-mail with information pertinent to classes.

Additional snow is predicted for Sunday night and into Monday. Frigid temperatures are in the forecast. Everyone should try to stay inside, stay warm, and stay safe.

Weather and Winter Quarter Start

We have been carefully monitoring the weather conditions locally as well as regionally and nationally.  Facilities Management staff have focused their priorities today on clearing roads and parking lots as well as areas around residence halls and the Hicks Student Center.

We have not yet made a determination whether classes will be postponed tomorrow, but we will do so later today or early tomorrow and will communicate any postponement via the K-Alert system as well as on the College website.  We know that there has been a great deal of disruption in travel, especially airline and bus cancellations.  We ask that everyone use appropriate discretion regarding their travel plans and make your return to campus when you feel it is safest to do so.

Even if we do commence winter term classes tomorrow,  we will ask that all faculty and students provide the greatest flexibility, understanding that some may be delayed in their return.  Students: if you are not able to be in class, please communicate via email with your professors to let them know.  Faculty: if you are unable to make it to campus, please notify your students.  Staff: if you are unable to make it to campus, please notify your supervisor.

Thank you for your understanding, and please be safe.

– President’s Staff

“A Year of Food in Kalamazoo” for Only $12!

2014 "A Year of Food in Kalamazoo" calendar
“A Year of Food in Kalamazoo” wall calendar is only $12 and only at the People’s Food Coop in Kalamazoo!

A group of K students has a last-minute gift idea for you that will keep on giving throughout 2014: “A Year of Food in Kalamazoo” wall calendar. This partner project between K’s First-Year Seminar “Cultivating Community” and the People’s Food Co-op in Kalamazoo is colorful, useful, and full of recipes, profiles of local food entrepreneurs, and great ideas that will feed your inner foodie’s soul for a whole year. It’s only $12 and will encourage the efforts of 17 K students and their professor, Amelia Katanski. Available from the People’s Food Coop, 507 Harrison St. in Kalamazoo. Happy New Year, indeed!

Dean’s List Fall 2013

Congratulations to the following Kalamazoo College students, who achieved a grade point average of 3.5 or better for a full-time course load of at least three units, without failing or withdrawing from any course, during the Fall 2013 academic term. Kudos to the entire group of some 300 students.

Fall 2013

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

Ayaka Abe
Michael Allen
Suma Alzouhayli
Katelyn Anderson
Giancarlo Anemone
Timothy Antel II
Jill Antonishen
Tyler Armor
Alberto Ayala

B

Shreya Bahl
Katherine Ballew
William Bartz
Abraham Bayha
Zoe Beaudry
Andrea Beitel
Kate Belew
William Bell
Erin Bensinger
Cleome Bernick-Roehr
Yuvraj Bhagat
Anup Bhullar
Mara Birndorf
Alexis Blakley
Reid Blanchett
Allison Bloomfield
Vanessa Boddy
Sean Bolourchi
Kira Boneff
Madeline Booth
Zoe Bowman
Riley Boyd
Andrew Breaugh
Erin Brown
Maxine Brown
Taylor Brown
Joel Bryson
Thaddeus Buttrey
Shanice Buys

C

Willina Cain
Robert Calco
Ellie Cannon
Olivia Cares
Sheila Carter
Marissa Cash
Alejandra Castillo
Nicholas Caywood
Katherine Cebelak
Madeleine Chilcote
Christine Cho
Jennifer Cho
Ji Won Choe
Amelia Chronis
Shahzaib Chughtai
Isabelle Ciaramitaro
Josefina Cibelli
Annaliese Collier
Quinton Colwell
Dylan Cramm Horn
Wilson Cross
David Crudder

D

Anna Dairaghi
Rachel Dandar
Bonnie Darrah
Sabrina Dass
Natalie Davenport
Corrin Davis
Eric De Witt
Emily Deal
Francesca DeAnda
Cecilia DeBoeck
David Demarest
Ryan DeMorrow
Jeremy DePree
Samir Deshpande
Dana DeVito
Melany Diaz
Miranda Doepker
Rachel Dranoff
Trisha Dunham
Erin DuRoss

E

Jordan Earnest
Andres ElAmin-Martinez
Rachel Ellis
Rachel Epstein
Sophia Ernstrom
Andrew Ertle
Michelle Escobar
Rachel Evans
Samuel Evans-Golden

F

Rachel Fadler
Michael Faust Jr.
Mario Ferrini
Alexis Fiebernitz
Claire Fielder
Olivia Finkelstein
Marie Fiori
Joshua Foley
Angela Fong
Van Forsman
Caroline Foura
Christopher Francis
Valentin Frank
Anthony Frattarelli
Annah Freudenburg
Gabriel Frishman
Rina Fujiwara
Lydia Fyie

G

Bridget Gallagher
Jacob Gallimore
Keith Garber
Brett Garwood
Dominic Gattuso
Kathleen George
Carl Ghafari
Mousa Ghannam
Sarah Ghans
Kelan Gill
Danielle Gin
Sarah Glass
Daniella Glymin
Carter Goetz
Marlon Gonzalez
Cameron Goodall
Kaitlin Gotcher
Adam Gothard
Alexandra Gothard
Claudia Greening
William Gribbin
Alexandra Groffsky
Daniel Grost
Guilherme Guedes
Alyse Guenther
Yicong Guo
Rebecca Guralnick

H

Robert Hammond
Nora Harris
Hadley Harrison
Taylor Hartley
Andrew Haubert
Veronica Hayden
Stephanie Heard
Frances Heldt
Ashley Henne
Jordan Henning
Kyle Hernandez
Yessica Hernandez
Alexander Hertel
Jordan Hessbrook
Kelsey Hill
Gabrielle Holme-Miller
Daniel Holtzman
Kaitlyn Horton
Allia Howard
Yuxi Huang
Audra Hudson
Patricia Hunter
Siwook Hwang

I

Pinar Inanli
Yohana Iyob

J

Nicolas Janssen
Clare Jensen
Jon Jerow
Tibin John
Amanda Johnson
Dylan Jolliffe
Brittany Jones

K

Kamalaldin Kamalaldin
Ginny Kang
Daniel Karn
Andrew Kaylor
Nicholas Keen
Jessica Kehoe
Jack Kemper
Allison Kennedy
Spencer Kennedy
Kelsey Kerbawy
Isabella Kerivan
Hannah Kim
Na Young Kim
Siga Kisielius
Benjamin Kochanowski
Younsuk Koh
Mehmet Kologlu
Matthew Kuntzman
Jasmine Kyon

L

Bryan Lara
Samuel Larioza
Bo Gyoung Lee
Gunyeop Lee
Hannah Lehker
Jacob Lenning
Rachel LePage
Madeline LeVasseur
Kelsi Levine
Samuel Lichtman-Mikol
Michael Lindley Jr.
Jacob Lindquist
Emily Lindsay
Gordon Liu
Megan Loyer
Chenxi Lu
Riley Lundquist
Liam Lundy

M

Lucy MacArthur Jr.
Lucy Mailing
Megan Malish
Sarah Manski
Scott Manski
Maxim Marino
Helena Marnauzs
Elizabeth Martin
Robert Martin
Jack Massion
Takumi Matsuzawa
Mindze Mbala-Nkanga
Madison McBarnes
Karly McCall
Mallory McClure
Sophia McFadden-Keesling
Aaron McKay
Sara McKinney
Molly Meddock
Roxanna Menchaca
Joshua Miller
Abigail Miner
Daniel Moore
Aliera Morasch
Cody Mosblech
Hagop Mouradian
Chloe Mpinga
Stuart Murch

N

Victoria Najacht
Alissa Neff
Audrey Negro
Miss Anne Nielsen
Nicholas Nizzardini
John Nocita
Mackenzie Norman

O

Colleen Orwin

P

Yunpeng Pang
Veeral Patel
Bronte Payne
Elizabeth Penix
Marlisa Pennington
Madison Perian
David Personke
Adam Peters
Caroline Peterson
Monysakada Phal
Thanh Thanh Phan
Katherine Pielemeier
Jasmine Policherla
Ayesha Popper
Emily Powers
Beau Prey

Q

 

R

Brian Raetz
Malavika Rao
James Reuter
Jenna Riehl
Melinda Rietkerk
Danielle Riffer-Reinert
Philip Ritchie
Annika Roberts
Sophie Roberts
Annalise Robinson
Megan Rochlitz
Jakob Rodseth
Stefanie Roudebush
Elinor Rubin-McGregor

S

Sharayu Salvi
Alejandra Sanchez
Keenan Sanford
Eri Sawai
Katharine Scheck
Jennie Scheerer
Ashley Schmidt
Natalie Schmitt
Sarah Schmitt
Aaron Schoenfeldt
Aaron Schwark
Rachel Selina
Lauren Seroka
Dylan Shearer
Cameron Shegos
Ke Sheng
Alec Sherrill
Sonam Shrestha
Brandon Siedlaczek
Petar Simic
Kaylah Simmons
Kathryn Skinner
Alexandra Smith
Caitlyn Smith
Emily Smith
Grace Smith
Sarah Smith
Cassandra Solis
Anika Sproull
Jordan Stainforth
Vethania Stavropoulos
Collin Steen
Hailey Stutz
Thomas Stuut
Michelle Sugimoto
Muyang Sun
Shang Sun
Kyle Sunden
Matthew Suter

T

Emerson Talanda-Fisher
Kiyoto Tanemura
Aidan Tank
Miss Farrell Tatum
William Tauke
Abigail Taylor
Kaitlyn Thiry
Brett Thomas
Eric Thornburg
Karen Timm
Nadia Torres
Alexander Townsend
Madeleine Tracey
Brooke Travis
Dakota Trinka
Minhkhang Truong
Ken Tsuchiya
Shelby Tuthill
Elizabeth Tyburski

U

V

Kaela Van Til
Erica Vanneste
Gregory Vasilion
Natalie Vazquez
Jordan Veillette
Madeline Vermeulen
Rachael Vettese
Julia Villarreal

W

Raoul Wadhwa
Reid Wagner
Kyra Walenga
Bailee Wallis
Emily Walsh
Jessica Walters
Samantha Weaver
Perri Weiderman
Paris Weisman
Clayton Weissenborn
Cameron Werner
Sarah Werner
Scott Wharam
Caitlyn Whitcomb
Jacob Whitney
Elijah Wickline
Arshia Will
Kieran Williams
Rachel Williams
Krystal Wilson
Camille Wood
Jenna Wood
Lindsay Worthington
Kate Wynne

X

Anja Xheka
Jie Xu

Y

Sina Yakhshi Tafti
Brent Yelton

Z

Lauren Zehnder
Jingcan Zhu
Kevin Zuker

Hornet Teams Display Computing Power in ACM Competition

Seniors Kyle Sunden, Lucas Kushner and Fayang Pan at the ACM competition
Orange Hornets (l-r) Kyle Sunden, Lucas Kushner, and Fayang Pan, all seniors.

Two teams of Kalamazoo College students recently competed and computed in the annual Association for Computing Machinery (ACM) Intercollegiate Regional Programming competition. When the dust settled, the Orange and Black left some big competitors feeling blue.

The Orange Hornets team of seniors Lucas Kushner, Fayang Pan, and Kyle Sunden solved two of nine problems and placed 34th out of about 126 teams from 61 colleges and universities throughout western Pennsylvania, Ohio, Michigan, eastern Ontario, and Indiana. The Black Hornets team of seniors Tibin John and Will Reichle and sophomore Sarah Manski also solved two of nine problems and finished 40th.

“It’s a combination of both time and correct submissions, with penalties for incorrect submissions,” explained K Associate Professor of Computer Science Pam Cutter who accompanied the teams to the competition held at Grand Valley State University in Grand Rapids.

She said the Orange Hornets solved the first problem in 50 minutes with three incorrect attempts and solved the second problem in 2:30 with one incorrect attempt. The Black Hornets solved the first problem in 1:41 with two incorrect attempts and solved the second problem in 3:39 with one incorrect attempt.

Last year, K teams placed 39th and 53rd out of 131 teams.

Senior Will Reichle, sophomore Sarah Manski and senior Tibin John at the ACM Competition
Black Hornets (l-r) senior Will Reichle, sophomore Sarah Manski, and senior Tibin John.

The 2013 competition included teams from big institutions such as Carnegie Mellon, Notre Dame, Ohio State, Penn State, University of Toronto, and University of Michigan—some of which finished behind Cutter’s Hornet squads.

“I am quite proud of our teams,” she said. “If you see this gang, give them a “Good job!”

ACM is the world’s largest educational and scientific computing society.